The Inflato Storage Container F.L.A.T from PorkWorks 0.3 (part name "inflatoFlat") has three nodes that behave much like stock shielded docking ports. These nodes are not recognized by CLS, even when connected to a passable component. The bug may apply to other part packs that have integrated docking ports.

EDIT: Test was done using CLS 1.0.2.0. None of the parts in the testbed had any module manager tweaks applied to them.

OK, thanks for this. I was worried about this part in particular (although I am not familiar with it). as it has more than one docking node in a single part. I suspect I will need to change CLS to make it more aware of individual nodes, and make it handle passability/hatches on an attachment node basis rather than a part basis. This will probably simplfy the code a bit - at the moment it is all a bit of a muddle.
I will try to do all of this an still make the PAI and config backwards compatable. We will have to see.

Ooops. Closed by mistake!

Fixed in v 1.0.4.1