I'm using your mod as a recommendation for Un Kerballed Start together with these:

Community Tech Tree (CommunityTechTree 1:3.4.4)
Contract Configurator (ContractConfigurator 2.1.4)
Contract Pack: Exploration Plus (ContractConfigurator-ExplorationPlus 2.0.1)
Contract Pack: Research Advancement Division (ResearchAdvancementDivision 1.2.1)
Custom Barn Kit (CustomBarnKit 1.1.22.0)
Custom Pre Launch Checks (CustomPreLaunchChecks 1.8.1.1)
EVARepairs (EVARepairs 1:v1.3.4)
Harmony 2 (Harmony2 2.2.1.0)
Hide Empty Tech Tree Nodes (HideEmptyTechNodes 1.3.2)
JNSQ (JNSQ 0.10.2)
JNSQ-KSRGAP (JNSQ-KSRGAP v1.0.1)
Kerbal Konstructs (KerbalKonstructs v1.8.5.0)
Kopernicus Planetary System Modifier (Kopernicus 2:release-1.12.1-139)
Kronometer (Kronometer v1.12.0.2)
ModularFlightIntegrator (ModularFlightIntegrator 1.2.10.0)
Module Manager (ModuleManager 4.2.2)
Planes With Purposes (ContractConfigurator-PlanesWithPurposes 1.5)
Scatterer Sunflare (Scatterer-sunflare 3:v0.0838)
Strategia (Strategia 1.8.0)
Un Kerballed Start (UnKerballedStart 1.3.0)

Issue Description

I did the preflight check of the contract at KSP Runway and then I fly to the island. At the island there are no waypoints in the hangars and no matter how I fly through (I tried with vertical wing and reversed (upside down) method) the requirement for the contact is not accepted.
Probably the position of the waypoint is not ok, because I do not see them on the map either.

Steps to reproduce

I attached the quicksave and a screenshot.
quicksave.zip