On the newest release of PermissionsEx (build #122), cloud I not use pex commands in consol and in game. The plugins i have on is: WorldEdit, Worldguard, Essentials, EssentialsChat, EssentialsGeoIP, EssentialsAntiBuild, EssentialsSpawn, PerWorldPlugins (unoffical updated version), Multiverse-Core, Multiverse-Inventories, Multiverse-SignPortals, Multiverse-EssentialsSupport, Multiverse-Portals, Multiverse-NetherPortals.
All plugins are full updated.

=============Here is the log=============
[16:59:30] [Server thread/INFO]: Starting minecraft server version 1.9.2
[16:59:30] [Server thread/INFO]: Loading properties
[16:59:30] [Server thread/INFO]: Default game type: SURVIVAL
[16:59:30] [Server thread/INFO]: This server is running CraftBukkit version git-Spigot-5a40365-f631379 (MC: 1.9.2) (Implementing API version 1.9.2-R0.1-SNAPSHOT)
[16:59:30] [Server thread/INFO]: Debug logging is disabled
[16:59:30] [Server thread/INFO]: Server Ping Player Sample Count: 12
[16:59:30] [Server thread/INFO]: Using 4 threads for Netty based IO
[16:59:30] [Server thread/INFO]: Generating keypair
[16:59:30] [Server thread/INFO]: Starting Minecraft server on :25565
[16:59:30] [Server thread/INFO]: Using default channel type
[16:59:31] [Server thread/INFO]: Set PluginClassLoader as parallel capable
[16:59:31] [Server thread/INFO]: [WorldEdit] Loading WorldEdit v6.1.1-SNAPSHOT;3482-867e59b
[16:59:31] [Server thread/INFO]: [Essentials] Loading Essentials vTeamCity
[16:59:31] [Server thread/INFO]: [EssentialsChat] Loading EssentialsChat vTeamCity
[16:59:31] [Server thread/INFO]: [EssentialsGeoIP] Loading EssentialsGeoIP vTeamCity
[16:59:31] [Server thread/INFO]: [EssentialsAntiBuild] Loading EssentialsAntiBuild vTeamCity
[16:59:31] [Server thread/INFO]: [PermissionsEx] Loading PermissionsEx v2.0-SNAPSHOT
[16:59:31] [Server thread/INFO]: [PerWorldPlugins] Loading PerWorldPlugins v1.3.0
[16:59:31] [Server thread/INFO]: [PerWorldPlugins] Registering event interceptor...
[16:59:31] [Server thread/INFO]: [EssentialsSpawn] Loading EssentialsSpawn vTeamCity
[16:59:31] [Server thread/INFO]: [Multiverse-Core] Loading Multiverse-Core v2.5-b719
[16:59:31] [Server thread/INFO]: [WorldGuard] Loading WorldGuard v6.1.2-SNAPSHOT;1653-65e48d1
[16:59:31] [Server thread/INFO]: [Multiverse-Inventories] Loading Multiverse-Inventories v2.5-b409
[16:59:31] [Server thread/INFO]: [Multiverse-SignPortals] Loading Multiverse-SignPortals v2.5-b697
[16:59:31] [Server thread/INFO]: [Multiverse-EssentialsSupport] Loading Multiverse-EssentialsSupport v2.5-b3
[16:59:31] [Server thread/INFO]: [Multiverse-Portals] Loading Multiverse-Portals v2.5-b742
[16:59:31] [Server thread/INFO]: [Multiverse-NetherPortals] Loading Multiverse-NetherPortals v2.5-b710
[16:59:31] [Server thread/INFO]: *** Beginning UUID conversion, this may take A LONG time ****
[16:59:31] [Server thread/INFO]: Preparing level "world"
[16:59:31] [Server thread/INFO]: -------- World Settings For [world] --------
[16:59:31] [Server thread/INFO]: Item Merge Radius: 2.5
[16:59:31] [Server thread/INFO]: Item Despawn Rate: 6000
[16:59:31] [Server thread/INFO]: Arrow Despawn Rate: 1200
[16:59:31] [Server thread/INFO]: Allow Zombie Pigmen to spawn from portal blocks: true
[16:59:31] [Server thread/INFO]: View Distance: 10
[16:59:31] [Server thread/INFO]: Zombie Aggressive Towards Villager: true
[16:59:31] [Server thread/INFO]: Experience Merge Radius: 3.0
[16:59:31] [Server thread/INFO]: Max Entity Collisions: 8
[16:59:31] [Server thread/INFO]: Custom Map Seeds: Village: 10387312 Feature: 14357617
[16:59:31] [Server thread/INFO]: Hopper Transfer: 8 Hopper Check: 8 Hopper Amount: 1
[16:59:31] [Server thread/INFO]: Random Lighting Updates: false
[16:59:31] [Server thread/INFO]: Mob Spawn Range: 4
[16:59:31] [Server thread/INFO]: Cactus Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Cane Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Melon Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Mushroom Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Pumpkin Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Sapling Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Wheat Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: NetherWart Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Structure Info Saving: true
[16:59:31] [Server thread/INFO]: Entity Tracking Range: Pl 48 / An 48 / Mo 48 / Mi 32 / Other 64
[16:59:31] [Server thread/INFO]: Nerfing mobs spawned from spawners: false
[16:59:31] [Server thread/INFO]: Entity Activation Range: An 32 / Mo 32 / Mi 16
[16:59:31] [Server thread/INFO]: Tile Max Tick Time: 50ms Entity max Tick Time: 50ms
[16:59:31] [Server thread/INFO]: Max TNT Explosions: 100
[16:59:31] [Server thread/INFO]: -------- World Settings For [world_nether] --------
[16:59:31] [Server thread/INFO]: Item Merge Radius: 2.5
[16:59:31] [Server thread/INFO]: Item Despawn Rate: 6000
[16:59:31] [Server thread/INFO]: Arrow Despawn Rate: 1200
[16:59:31] [Server thread/INFO]: Allow Zombie Pigmen to spawn from portal blocks: true
[16:59:31] [Server thread/INFO]: View Distance: 10
[16:59:31] [Server thread/INFO]: Zombie Aggressive Towards Villager: true
[16:59:31] [Server thread/INFO]: Experience Merge Radius: 3.0
[16:59:31] [Server thread/INFO]: Max Entity Collisions: 8
[16:59:31] [Server thread/INFO]: Custom Map Seeds: Village: 10387312 Feature: 14357617
[16:59:31] [Server thread/INFO]: Hopper Transfer: 8 Hopper Check: 8 Hopper Amount: 1
[16:59:31] [Server thread/INFO]: Random Lighting Updates: false
[16:59:31] [Server thread/INFO]: Mob Spawn Range: 4
[16:59:31] [Server thread/INFO]: Cactus Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Cane Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Melon Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Mushroom Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Pumpkin Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Sapling Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Wheat Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: NetherWart Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Structure Info Saving: true
[16:59:31] [Server thread/INFO]: Entity Tracking Range: Pl 48 / An 48 / Mo 48 / Mi 32 / Other 64
[16:59:31] [Server thread/INFO]: Nerfing mobs spawned from spawners: false
[16:59:31] [Server thread/INFO]: Entity Activation Range: An 32 / Mo 32 / Mi 16
[16:59:31] [Server thread/INFO]: Tile Max Tick Time: 50ms Entity max Tick Time: 50ms
[16:59:31] [Server thread/INFO]: Max TNT Explosions: 100
[16:59:31] [Server thread/INFO]: -------- World Settings For [world_the_end] --------
[16:59:31] [Server thread/INFO]: Item Merge Radius: 2.5
[16:59:31] [Server thread/INFO]: Item Despawn Rate: 6000
[16:59:31] [Server thread/INFO]: Arrow Despawn Rate: 1200
[16:59:31] [Server thread/INFO]: Allow Zombie Pigmen to spawn from portal blocks: true
[16:59:31] [Server thread/INFO]: View Distance: 10
[16:59:31] [Server thread/INFO]: Zombie Aggressive Towards Villager: true
[16:59:31] [Server thread/INFO]: Experience Merge Radius: 3.0
[16:59:31] [Server thread/INFO]: Max Entity Collisions: 8
[16:59:31] [Server thread/INFO]: Custom Map Seeds: Village: 10387312 Feature: 14357617
[16:59:31] [Server thread/INFO]: Hopper Transfer: 8 Hopper Check: 8 Hopper Amount: 1
[16:59:31] [Server thread/INFO]: Random Lighting Updates: false
[16:59:31] [Server thread/INFO]: Mob Spawn Range: 4
[16:59:31] [Server thread/INFO]: Cactus Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Cane Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Melon Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Mushroom Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Pumpkin Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Sapling Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Wheat Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: NetherWart Growth Modifier: 100%
[16:59:31] [Server thread/INFO]: Structure Info Saving: true
[16:59:31] [Server thread/INFO]: Entity Tracking Range: Pl 48 / An 48 / Mo 48 / Mi 32 / Other 64
[16:59:31] [Server thread/INFO]: Nerfing mobs spawned from spawners: false
[16:59:31] [Server thread/INFO]: Entity Activation Range: An 32 / Mo 32 / Mi 16
[16:59:31] [Server thread/INFO]: Tile Max Tick Time: 50ms Entity max Tick Time: 50ms
[16:59:31] [Server thread/INFO]: Max TNT Explosions: 100
[16:59:31] [Server thread/INFO]: Preparing start region for level 0 (Seed: 3379757160434439938)
[16:59:32] [Server thread/INFO]: Preparing spawn area: 42%
[16:59:33] [Server thread/INFO]: Preparing start region for level 1 (Seed: -718631713203120)
[16:59:33] [Server thread/INFO]: Preparing start region for level 2 (Seed: -718631713203120)
[16:59:34] [Server thread/INFO]: [WorldEdit] Enabling WorldEdit v6.1.1-SNAPSHOT;3482-867e59b
[16:59:34] [Server thread/INFO]: WEPIF: Using the Bukkit Permissions API.
[16:59:34] [Server thread/INFO]: [WorldEdit] Using com.sk89q.worldedit.bukkit.adapter.impl.Spigot_v1_9_R1 as the Bukkit adapter
[16:59:34] [Server thread/INFO]: [Essentials] Enabling Essentials vTeamCity
[16:59:34] [Server thread/INFO]: Bukkit version format changed. Version not checked.
[16:59:34] [Server thread/INFO]: git-Spigot-5a40365-f631379 (MC: 1.9.2)
[16:59:34] [Server thread/INFO]: 1.9.2-R0.1-SNAPSHOT
[16:59:34] [Server thread/INFO]: Using locale da_DK
[16:59:34] [Server thread/INFO]: Using locale da_DK
[16:59:34] [Server thread/INFO]: Essentials: Using config file enhanced permissions.
[16:59:34] [Server thread/INFO]: Permissions listed in as player-commands will be given to all users.
[16:59:34] [Server thread/INFO]: [EssentialsChat] Enabling EssentialsChat vTeamCity
[16:59:34] [Server thread/INFO]: [EssentialsGeoIP] Enabling EssentialsGeoIP vTeamCity
[16:59:34] [Server thread/INFO]: [EssentialsGeoIP] This product includes GeoLite data created by MaxMind, available from http://www.maxmind.com/.
[16:59:34] [Server thread/INFO]: [EssentialsAntiBuild] Enabling EssentialsAntiBuild vTeamCity
[16:59:34] [Server thread/INFO]: [PermissionsEx] Enabling PermissionsEx v2.0-SNAPSHOT
[16:59:35] [Server thread/INFO]: WEPIF: Using the Bukkit Permissions API.
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
Caused by: java.lang.ClassNotFoundException: ru.tehkode.permissions.bukkit.PermissionsEx
at java.net.URLClassLoader.findClass(Unknown Source) ~[?:1.8.0_91]
at org.bukkit.plugin.java.PluginClassLoader.findClass(PluginClassLoader.java:101) ~[spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.PluginClassLoader.findClass(PluginClassLoader.java:86) ~[spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.ClassLoader.loadClass(Unknown Source) ~[?:1.8.0_91]
at java.lang.ClassLoader.loadClass(Unknown Source) ~[?:1.8.0_91]
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [PerWorldPlugins] Enabling PerWorldPlugins v1.3.0
[16:59:35] [Server thread/INFO]: [PerWorldPlugins] Enabled, attempting to inject CommandHandler...
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [EssentialsSpawn] Enabling EssentialsSpawn vTeamCity
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-Core] Enabling Multiverse-Core v2.5-b719
[16:59:35] [Server thread/WARN]: [Multiverse-Core] WorldManager: Can't load this world because the folder was deleted/moved: world1
[16:59:35] [Server thread/WARN]: [Multiverse-Core] Use '/mv remove' to remove it from the config!
[16:59:35] [Server thread/INFO]: [Multiverse-Core] 3 - World(s) loaded.
[16:59:35] [Server thread/INFO]: [Multiverse-Core] Version 2.5-b719 (API v20) Enabled - By Rigby, fernferret, lithium3141 and main--
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [WorldGuard] Enabling WorldGuard v6.1.2-SNAPSHOT;1653-65e48d1
[16:59:35] [Server thread/INFO]: WorldGuard TNT ignition is PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lighters are PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lava fire is blocked.
[16:59:35] [Server thread/INFO]: WorldGuard Fire spread is UNRESTRICTED.
[16:59:35] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world'
[16:59:35] [Server thread/INFO]: WorldGuard TNT ignition is PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lighters are PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lava fire is blocked.
[16:59:35] [Server thread/INFO]: WorldGuard Fire spread is UNRESTRICTED.
[16:59:35] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world_nether'
[16:59:35] [Server thread/INFO]: WorldGuard TNT ignition is PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lighters are PERMITTED.
[16:59:35] [Server thread/INFO]: WorldGuard Lava fire is blocked.
[16:59:35] [Server thread/INFO]: WorldGuard Fire spread is UNRESTRICTED.
[16:59:35] [Server thread/INFO]: [WorldGuard] Loaded configuration for world 'world_the_end'
[16:59:35] [Server thread/INFO]: [WorldGuard] Loading region data...
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-Inventories] Enabling Multiverse-Inventories v2.5-b409
[16:59:35] [Server thread/INFO]: [Multiverse-Inventories 2.5-b409] enabled.
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-SignPortals] Enabling Multiverse-SignPortals v2.5-b697
[16:59:35] [Server thread/INFO]: [Multiverse-SignPortals 2.5-b697] Enabled - By Rigby and fernferret
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-EssentialsSupport] Enabling Multiverse-EssentialsSupport v2.5-b3
[16:59:35] [Server thread/INFO]: Multiverse-EssentialsSupport - Version 2.5-b3 enabled - By main()
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-Portals] Enabling Multiverse-Portals v2.5-b742
[16:59:35] [Server thread/INFO]: [Multiverse-Portals] - Version 2.5-b742 Enabled - By Rigby and fernferret
[16:59:35] [Server thread/INFO]: [MVPLogging] 0 - Portals(s) loaded
[16:59:35] [Server thread/INFO]: [Multiverse-Portals] Found WorldEdit. Using it for selections.
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: [Multiverse-NetherPortals] Enabling Multiverse-NetherPortals v2.5-b710
[16:59:35] [Server thread/INFO]: [Multiverse-NetherPortals] - Version 2.5-b710 Enabled - By Rigby and fernferret
[16:59:35] [Server thread/INFO]: Essentials: Using PermissionsEx based permissions.
[16:59:35] [Server thread/ERROR]: **** THIS IS NOT AN ISSUE TO DO WITH PER WORLD PLUGINS ****
Could not pass event PluginEnableEvent to Essentials vTeamCity
org.bukkit.event.EventException
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:118) ~[?:?]
at org.bukkit.plugin.RegisteredListener.callEvent(RegisteredListener.java:62) ~[spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PWPRegisteredListener.callEvent(PWPRegisteredListener.java:28) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.fireEvent(SimplePluginManager.java:502) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.SimplePluginManager.callEvent(SimplePluginManager.java:487) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.plugin.java.JavaPluginLoader.enablePlugin(JavaPluginLoader.java:347) [spigot.jar:git-Spigot-5a40365-f631379]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader.enablePlugin(PerWorldPluginLoader.java:141) [PerWorldPlugins.jar:?]
at org.bukkit.plugin.SimplePluginManager.enablePlugin(SimplePluginManager.java:405) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.loadPlugin(CraftServer.java:361) [spigot.jar:git-Spigot-5a40365-f631379]
at org.bukkit.craftbukkit.v1_9_R1.CraftServer.enablePlugins(CraftServer.java:321) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.t(MinecraftServer.java:411) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.l(MinecraftServer.java:376) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.a(MinecraftServer.java:331) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.DedicatedServer.init(DedicatedServer.java:269) [spigot.jar:git-Spigot-5a40365-f631379]
at net.minecraft.server.v1_9_R1.MinecraftServer.run(MinecraftServer.java:527) [spigot.jar:git-Spigot-5a40365-f631379]
at java.lang.Thread.run(Unknown Source) [?:1.8.0_91]
Caused by: java.lang.NoClassDefFoundError: ru/tehkode/permissions/bukkit/PermissionsEx
at com.earth2me.essentials.perm.PermissionsExHandler.(PermissionsExHandler.java:17) ~[?:?]
at com.earth2me.essentials.perm.PermissionsHandler.checkPermissions(PermissionsHandler.java:121) ~[?:?]
at com.earth2me.essentials.EssentialsPluginListener.onPluginEnable(EssentialsPluginListener.java:30) ~[?:?]
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_91]
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) ~[?:1.8.0_91]
at java.lang.reflect.Method.invoke(Unknown Source) ~[?:1.8.0_91]
at me.incomprehendable.dev.pwp.transparentlisteners.PerWorldPluginLoader$1.execute(PerWorldPluginLoader.java:116) ~[?:?]
... 15 more
[16:59:35] [Server thread/INFO]: Server permissions file permissions.yml is empty, ignoring it
[16:59:35] [Server thread/INFO]: Done (4,669s)! For help, type "help" or "?"

I also have this issue, I'm going to revert to the previous build to see if the issue is there as well.
Spigot 1.9.2

The dev builds are a complete rewrite and work differently in some ways. Don't use them if you don't know what you're doing.