Please explain your feature request to the best of your abilities:

Towns that get conquered mid war remain conquered by their ally Nation after war, because they are considered allies with the enemies when knocked out of war or conquered.

If a town gets conquered mid war, they are considered allies immediately with the conquered town before the war ends. I think after the war ALL conquering should be done.
Either just knock the team out the war if possible or even better keep them in the war but strike the town out in some way.

Hopefully allowing all Nations and Allies to remain in the correct order.