Hello there.

As of writing this we are using both the latest version of VNP and Bukkit.

Whenever the server restarts all admins are reverted back to all toggles and effects on. Is there any way to fix this problem? We have to reset all our toggles to the way we have them for ourselves every time right now.

If I have clearly missed something I am sorry, I have read over quite a few things but have yet to see a fix for this problem.

Currently the way the toggles are designed is that you set your permissions to however you want it to be on join. So if you want nopickup enabled on join, grant vanish.nopickup

Toggling does not persist across sessions on 3.x