Just a suggestion, might be a bit too involved?

1. Add a 'page' to the atlas that lists all the way points; clicking on a way point takes you to the map with that way point centred.
2. Add a slot behind each way point in that list which can take a compass (only 1 compass can be used in the list, could also be a radio-button maybe?). Then the first compass in your hot-bar points towards that way point.

i just was about to add a request for a waypoint /w coordinate page when i saw this. this atlas is awesome in conceept, but in order for this to replace a minimap, we really need an index of waypoints /w coordinates so we can use a compass and navigate to them with the help of the atlas. as it stands, any large map, with lots of waypoints would be useless in terms of finding directions. meaning you'd have to run this + a fuller featured map system which is excessive. hopefully we can get a waypoint list to help?