I know the mod page says you can disable different modules, but I found nothing on how you do that?
If you could point me in the right direction, I would be very thankful.

Currently I am using the latest release for version 1.20.1 on forge.
I have the Placebo and Patchouli dependencies installed.

go to your config file, then Apotheosis, then Apotheosis.cfg, then change whichever module you want off from true to false

Thanks, this was a great help!