I'll let this screenshot talk for itself:

Had a feeling this would happen but was hoping that I left enough z depth in the VR changes to avoid it. I have a fix in mind but I'n not sure when I'll get around to it.

On a similar vein, it causes everything to basically ignore the containers they are supposed to be contained in (flooding text, icons, etc). Downgrading to 3.5.258 fixes it for now.

https://github.com/Discomanco/Enigmatica2ExpertSkyblock/issues/58

That's not actually the same issue and has to do with OpenGL stencil buffers but I did just fix that less than 24hrs ago in development (OpenGL can be a right P.I.T.A. sometimes).

Ah, my mistake. Very nice to see that you've already taken care of it though! =D