E.g., the farming station from Ender IO doesn’t work with Biomes o’ Plenty’s silty dirt, silty grass, loamy dirt, loamy grass, etc..

Also, saplings from Pam’s Harvestcraft cannot be planted on dirt and grass blocks from Biomes o’ Plenty.

This is because those mods check specifically for Vanilla dirt and grass, and there's not really anything we can do about that. For example, EnderIO does the following: https://github.com/SleepyTrousers/EnderIO/blob/11e874b89e05008dfd7cf2c25566da4efa1215ff/src/main/java/crazypants/enderio/machine/farm/TileFarmStation.java#L163

As far as I can tell, there's not any event to hook into this. Pam's would also likely be performing similar checks.