Versions: 1.7.10-forge1448, Baubles-1.7.10-1.0.1.10, Botania r1.7-225
Optifine and Fastcraft is present.
Server is using KCauldron.

I can reproduce in singleplayer.
How to reproduce: Override a bauble with Manaseer Monocle, and apply Phantom Ink on it, the Monocle will be remain in the crafting grid, and the result bauble's status shows it still has the Monocle in it, and the Monocle can be taken out of the bauble.
This can only duplicate the monocle once per bauble. Unless you have some way to get rid of the Phantom Ink.

It doesn't work with Ivys. I guess you forgot checking for Phantom Ink.