Taking into account that the Pepper has a rare chance of dropping Habanero when farming it, wouldn't it be possible to change the crop definition in Botany Pots to reflect that?

I don't know the exact chance that it has of dropping said Habanero instead of the Pepper.
Something between 0.1% - 0.5% in crop definition

I could not find Habanero in the Mod Pam's HarvestCraft.

@ngoetti They're asking about Simple Farming. It looks to be registered under the ID simplefarming:habanero.