Their is a conflict with Archimede's Ships mod. Was wondering if this could get fixed?!

What sort of conflict? It could be anything from world corruption, to crashing, to simply not connecting. The more specific, the better.

When they are plased on a "ship" and the ship is assemble the blocks rotate and do not hold their intended shape

These are Pictures so you can see what is happening!

Keep in mind there was some buggy rotation code with slopes prior to dev r8 releases. In this case though it would usually crash the game. The latest dev releases revert slopes to the default type when rotation goes wrong, BUT, they do not strip blocks of their other properties as shown in the image. I suspect Archimedes' is probably catching this gamebreaking behavior and just resetting the blocks entirely during compilation.

Please give the latest development release of this mod a try and let me know if you are still experiencing the bug.

Yea still doing it. Using newest updated mod version's