I can't tell you exactly how many are missing their breaking tool, but I can tell you at least Chests are.

For example, if a normal chest is set to break with a axe, so using that tool will break it faster then using anything else. Chests added by this mod, do not have this set.

No worries, just wanted to point it out. So many mods seem to miss this little thing.

I must have forgot chests and trapped chests in the port, good catch!