The Dimensional Storage Actuator and Storage Accessor from Occultism, as well as the Storage Lectern from Ars Nouveau, seem to not interact well with EMI's recipe tree. The tree doesn't detect items in the open inventory, and doesn't craft items when they are clicked.

The Storage Lectern seems to be able to pull some items - I was testing with a comparator and it put the quartz in, but nothing else, even when I had the rest in my own inventory.

P.S: As for the Occultism stuff, it would be very cool if it could also handle other machines attached via Djinni. What machine is attached is available in the interface, but would require specific compatibility to properly detect and use. What I mean is that beyond just the crafting table support, it could also issue stone to be smelted if you click that step of the tree.

EDIT: Perhaps I opened this too hastily, there's a closed issue regarding this over at occultism. Turns out it's not specifically about the recipe tree. The plus button does work as expected, thinking about it it's rather surprising that this is an issue at all given that.