Though Crafting Station: JEI Edition is compatible with JEI and EMI is compatible with JEI, there is still a little imcompability between them.

1. GUI overlap
2. Crafting station doesn't support instant crafting. No matter how you click stack or recipe, items are just filled into the slots but no crafting.

(Though Crafting Station: JEI Edition is open source, it doesn't accept issue, so I can only comment this issue under its curseforge comments page, and report it here.)

Can you enable the dev exclusion area setting and send this screenshot again?

I can't craft into inventory or craft into cursor. I can only fill in the slots.

This mod isn't defining any exclusion areas to EMI or JEI, so EMI can't move out of the way. They need to specify them in a plugin.