Greetings,
I'm a none code contributor of VulkanMod and EnhancedBlockEntities has recently become compatible with VulkanMod with one issue remaining where animation don't properly work. Collateral (the main developer) suspects that EnhancedBlockEntities will need to inject VulkanMod's chunk building code, that was introduced by version 0.4.0, to be fully compatible.
I do understand that requesting a fix for something VulkanMod broke is kind of rude, but it's unfortunately the only feasible solution from all I know. I'm not a developer and only have a weak understanding of VulkanMod's code, so if any questions arise, you will need to talk to Collateral.