Currently, you can not craft things you have research for in the ME crafting terminal, you can shift-click in the recipe, and it pulls the parts but then you have to pull those out and take them to a tech table. I would love to be able to craft recipies in the AE Crafting Terminal using the ME inventory.

All support able crafting tables are already supported, as I am using reflection to test if the current crafting container contains a reference of a player, if it is not possible I doubt I can do something about that.

Why not simply add recipes the way other mods do?

because the research system is the whole point of this mod?!

I had assumed the built-in recipe system to be dynamic enough to handle that. I guess you're saying it's not, which shouldn't be surprising given Minecraft's track record, but is still disappointing. I suggest asking the AE2 guys or someone else familiar for help integrating with it. I've never worked with AE2, but I've heard its API is good.