Default settings for Blocks mineral deposits can replace seem to use the wrong block metadata:

        S:"Blocks mineral deposits can replace" <
            minecraft:stone:0
            minecraft:stone:1
            minecraft:stone:2
            minecraft:stone:3
            minecraft:dirt:0
            minecraft:netherrack:0
        >

minecraft:stone:0 - Stone
minecraft:stone:1 - Granite
minecraft:stone:2 - Polished Granite
minecraft:stone:3 - Diorite
minecraft:stone:4 - Polished Diorite
minecraft:stone:5 - Andesite
minecraft:stone:6 - Polished Andesite

Yup, noticed this today when testing for an Underground Biomes Construct compat I made

You made an underground biomes construct compat?!

Started, but had to give up.

Very sad to hear that, although, I suspect there might be a workaround together with Ore Stone Variants. I'm still checking out your latest work. Thank you