im trying to build something for later and sometimes the structures are simply just in the way. i can turn off generate structures but the hbm ones will still remain

What version are you on and what toggle did you use for disabling the structures? The config or the world generation option?

im on the latest hbm version and mc version 1.7.10 and i did through the world generation options

By default, the structure config will ignore the world generator options, you can change this by setting 1.03_enableDungeonSpawn as well as 5.00_enableStructures to flag in the config file, this will make the structure setting depend entirely on the world generator options.