Description

Due to this commit 8167fbf and the way commands-allow-op works, having this apply-default-negated-permissions-before-wildcards: true and commands-allow-op: false set, makes luckperms.* being overriden.

Reproduction steps

1. Open the config.yml file and set:

apply-default-negated-permissions-before-wildcards: true
commands-allow-op: false

2. Run /lp user example permission set luckperms.*
3. Restart the server
4. Run /lp
5. You will be said you do not have permission to use any sub commands

Expected behaviour

At step 5, you should be said to use /lp help and have acces to all the sub commands

Environment details

• Server type/version: Spigot running version 1.16.4 build a19903d-23618b2
• LuckPerms version: v5.2.116

Explanation

Until said commit, having set commands-allow-op: false would just make opped users to need the nodes set, and luckperms.* would make the user have full access to LuckPerms both being it op or not. Then with this changes:
https://github.com/lucko/LuckPerms/blob/8167fbf73f99debb0cd8c1a46412a0176afb88af/bukkit/src/main/java/me/lucko/luckperms/bukkit/calculator/DefaultsProcessor.java#L63-L77
luckperms.* would only be overriden with commands-allow-op: false as it changes default permissions of LuckPerms from OP to False
https://github.com/lucko/LuckPerms/blob/8167fbf73f99debb0cd8c1a46412a0176afb88af/bukkit/src/main/java/me/lucko/luckperms/bukkit/LPBukkitPlugin.java#L268

Yes - you are correct, these features do not work with each other.

You need to pick which one you want to enable - I don't see what the bug here is? They are both working exactly as intended.