The Quantum Entangloporter will only connect to pressurized pipes and even then I haven't been able to get it to transmit anything.

Have you tried it on a server? It works fine in Singleplayer but on servers it doesn't.

Ok, it does work on servers with mekanism alone.

Okay, I don't know why, maybe it just needed a server restart, but now it works. That's strange.
And it won't work with Mekanism's pipes, and they won't connect to the Induction Port anymore.
Got a crash when I tried to use the configurator on them:

Crash Report: http://pastebin.com/zMr0e7GB

Can't reproduce with the very latest source. Make sure you're configuring the sides properly and that the entangloporter is set to a frequency.