added both items to the config, it only lets me put in one or the other not both any ideas?

That would make sense as the morphing tool morphes into a mod wrench when it recognizes the mod from the block you hover over. If you have two of the same mod, it wouldn't know which one to use.

From the perspective of the tool morphing into the item when looking at blocks from the item's mod, it is understandable that having more than one item in the tool from the same mod would be confusing to the tool. But this is a serious limition.

Is there no way to get around this?

If this is still relevant in the newest version, please reopen the issue