For some reason tools, Blocks (- Forge controllers) and Armors are not showing up in JEI even with JER is there any way to fix this or is this intentional ive spent basically 2 days trying to make a mythril Drill and a stormyx sheild

This should be fixed with later versions of JEI, as seen in the linked issue.

There is generally way to little information to go on here, and I would like it if you could provide more details regarding this issue.
Especially your full modlist, which you can find in your latest.log inside your instances logs folder. Go here for more details: https://fabricmc.net/wiki/player:tutorials:logs_ml:windows

Generally JEI has not been supported on Fabric for a long period of its history, and as such alternatives like Roughly Enough Items or EMI are better. After submitting your logs I would advice you to try these out instead, and see if the rest of the Kyber blocks/ores/tools reappear.

Bumping this issue, are you still experiencing this problem?

Still experiencing but we just switch to emi works perfectly on there sorry i swear i replied but i must of forgot