Amendments mod has its own torch/lantern holding animation, and in most cases it works perfectly with NEA, but when I charge or hold crossbow/bow, the torch/lantern don't hide with "Bow Animation Fixes" setting.
Is there a way to fix this without disabling these animations?

No clue how they implemented the animation that it breaks like that. I can take a look later, but possible that there is not much I can do.