I am using Valhelsia Vanilla Expanded 1.18.2 with origins mod. Everything was going well until I installed this mod for fabric 1.18.2 along with origins++ 1.18.2. I installed different version of Pehkui and the crafting table issue continued until I uninstalled.

I can still click the box and get the items, but I can't see them. Any tips?

Looking at your issue on Origins++, this was caused by fastbench. Glad you figured it out.

Pehkui does not change anything to do with crafting, so I don't know what would be causing this.

Does this still happen with Pehkui and without Origins++?
If this only happens when both Pehkui and Origins++ are present, report to Origins++ instead.