Bug description
If an inventory is picked up with a cardboard box while an upgrade is present in an adjacent extracting pipe, the upgrade is deleted.

Steps to reproduce the issue

1. Set a pipe to extract from an inventory.
2. Apply pipe upgrade
3. Pick up inventory with cardboard box.
4. Upgrade does not pop and is not present when inventory is replaced.

Expected behavior
The upgrade should pop into the world like when an inventory is broken.

Log files
N/A

Versions

Minecraft version: 1.20.1
Mod loader: NeoForge
Mod loader version: 47.1.76
Mod version: 1.2.5

Other mods
Direwolf20 1.20 pack on FTB, version 1.10 as of post

Screenshots (Optional)
Screenshots of the issue.

Does the pipe still visually look like its extracting after taking the block away?

No, it switches to the disconnected state.

and it doesn't throw out the upgrade?
Can you double check this. Sometimes it gets yeeted a little further away.

Unless it got thrown out of the range of my magnet, which is pretty decent, no, it just disappears.

Alright, I found the issue.
This is a bug with Mekanism.

It basically deletes all items that should get dropped while a cardboard box is placed:
https://github.com/mekanism/Mekanism/blob/b029d0fad666aae3119ed3272ebfee491510f536/src/main/java/mekanism/common/CommonWorldTickHandler.java#L89-L94
Please report the issue to their issue tracker and provide this link.