so when i go into the terminal or just shows double of what’s in my chests and the game thinks there’s double but there’s not so kinda like ghost blocks but with items

Having both sides of a double chest connected to a pipe network will result in items in the double chest being shown twice. This can easily be fixed by disconnecting one of the double chest halves by removing the pipe or by right-clicking with a pipe wrench.

Unfortunately, this issue is difficult to fix as double chests use special handling in the game, and adding special handling for them would mean that double chests added by other mods might then still be affected by this issue.