I'm aware of the following mods adding this feature. I'm not sure what could be done about it tho.
Quark adds recipes for 4 chests from logs, and for wood-dependent chests. (Vaskii would probably be willing to add a compatibility check on their end)
Ender IO also adds an 8 logs - 4 chests recipe.
Bibliocraft also has some chests that can be made with just wood planks and slabs.

I don't know how much work you want to put into intermod compatibility, so I'm sorry if this in an inappropriate issue report.

So, here's my take on interfering with other mods' content. Pyrotech will alter vanilla content in an attempt to provide a complete, stand-alone experience, but it will not interfere with other mods' content for these reasons:

1. There are too many mods to try and keep up with content that may break progression, and
2. When Pt starts interfering with other mods, it becomes too opinionated - it is the responsibility of
   the pack designer to tailor these things to their specific design, and
3. There are existing tools that can do this that are well-implemented and battle-tested, and
4. Altering other mods' content is simply outside the scope of the project.

I'm going to go ahead and close this because I don't plan on messing with other mods' recipes. Thanks for the report tho!