As seen in the screenshot, in the Engineer's Crafting Table, the Sort/Filter buttons render on top of the interface instead of nearer to the block's inventory.
Log not included due to cosmetic bug.
muuyo commented
Didn't see the General Settings section of the mod settings, so I didn't see it was blacklistable - anyway, for anyone with the same issue, add blusunrize.immersiveengineering.client.gui.CraftingTableScreen to the Ignored Screen section in General Settings.