I'm using Reliquary 1.2 with Forge 10.13.1.1225 on MC 1.7.10 and I'm trying to disable the gun-related recipes in the xreliquary.cfg file. For example, I'm setting the following:

xreliquary:bullet = false
xreliquary:handgun = false
xreliquary:magazine = false
xreliquary:gun_part_ = false

It appears that the xreliquery.cfg is being re-written on the start up of Minecraft which wipes out my changes. After starting Minecraft those settings in xreliquary.cfg are all set back to true.

It was due to the ":" in our config keys, ie. "xreliquary:"

I replaced it with "_" and reparse it as ":" later when checking the actual recipes and it appears to have resolved the issue. Also hopefully I've resolved the lack of sorting on first run. Expect a fix in one of our near-future releases.

Thanks for the report, I'll try and figure out what's going on. Are you on a server or just playing in SSP?