The title says it all.
Builder with Clearing Fortune Quarry card mines block without fortune at all.
You can check it simply:

• Builder with ('Dirty') Fortune Quarry card mines flint from gravel.
• Builder with Clearing Fortune Quarry card mines gravel.

You should add only one 'or' statement here:
https://github.com/McJty/RFTools/blob/master/src/main/java/mcjty/rftools/blocks/spaceprojector/BuilderTileEntity.java#L1009

Change string from:
List<ItemStack> drops = block.getDrops(worldObj, sx, sy, sz, meta, getCardType() == ShapeCardItem.CARD_QUARRY_FORTUNE ? 3 : 0);
to
List<ItemStack> drops = block.getDrops(worldObj, sx, sy, sz, meta, (getCardType() == ShapeCardItem.CARD_QUARRY_FORTUNE || getCardType() == ShapeCardItem.CARD_QUARRY_CLEAR_FORTUNE) ? 3 : 0);

Or should I create pull request for that?)

No this is fine. I can manage with this. Thanks

Fixed in next release