When you holding wrench and click on crafting table, for example, it doesn't open table gui

Would be nice if wrench checks if it can rotate this block, and if not, it using just like right click.

The only way that I found to bypass opening chests and dispensers is to completely bypass right clicking on blocks.
Trying to activate the block again if rotation fails could also cause a lot of confusion and inconsistency.

For example: a wall lever can only be rotated if it has a block to move to, and would be flipped otherwise.

I think making sure the wrench never activates a block is the most simple and clear solution.