Shift-clicking may eat the dyes.
Need to investigate the whole autocrating of the items.

Changed the YahHammer and Dye to hasContainerItem = yes and dropped the ShapedOreHammerRecipe. That means the only problem now is the obsidian in the recipe.

1. Autocrafing with a hammer recipe, uses the hammer up completely.
2. Autocrafting with a dye recipe, uses the dye up completely.

See AppliedEnergistics/Applied-Energistics-2#2752

So my custom recipe handling is wrong.
Look at the vanilla handling and work from there . eg. buckets.

eg. Cake recipe uses three water buckets and gives you back three empty buckets

015f445

Fixed and tested with AE2.
My some of those recipes are complicated!

Is this fix included in Woot 1.10.2-1.2.6? That's the version currently in FTB Beyond and my AE2 crafting patterns are still consuming the hammer and dyes :(

The fix is in 1.10.2-1.30 which I'm hoping to release this weekend. Feature creep has slowed down that release a bit.

Thank you Ipsis. Reading " Ipsis added this to the 1.10.2-1.2.6 milestone on Feb 19 " in one of the updates above was what made me think it was in 1.2.6, so no worries!

Github doesn't seem to update with the new milestone, so I can fully understand the confusion.