When auto crafting generators. Ae2 will always request an re battery from ic2 with no damage value.

Those batteries only craft with a 0/10k value causing a hang which can't be fixed.

I have tried manually entering recipe to include a 0/10k value battery and also tried changing the me interface priorities to craft the battery first.

A work around is to treat the batteries as though they weren't a basic crafting recipe. Use the AE2 interface to pump the ingredients into a non-ae2 autocrafter (such as RFTool's Crafter) and then pipe the results back into the interface.

You want to use tech reborn battery and it just works fine.

Not much of a modpack issue, if the autocrafting system can't ignore damage/metadata then alternative means are needed such as recomended by Yoosk and ouroborus already.