I am using EMF 2.4.1 and ETF 6.2.9 and I just updated to the new pack version, but the eyes still a problem to me.

Here is my skin:

I followed the guide and I set the setting to "All Skins" but I still get black eyes.
The only mod that has that touches skins, is Offline skins. But I don't think that would affect this resource pack.