When downloading APR fresh/or updating, there is an APR file, and then APR-Core, then APR-Expansions. This APR file has the new APR.toc which was required for the Action push to CF/WowInterface.

It appears, that with this folder taking precedence, it appears first in the Addons list displayed in game:

and the old APR-Core/Expansions to display further down:

Since the APR folder as a whole is required for the packaging, can the APR-Core be moved into that, or can the APR.toc file that is specifically needed be moved into APR-Core?

Note, turning on/off the APR folder in the Addons list does not cause issues, so it seems this issue is only specific to proper display of the Addon in the Addons List.